Evaluate

class celltk.evaluate.Evaluate(output='evaluate', **kwargs)

Parameters

output (str, default: 'evaluate') –

make_single_cell_stack(image, array, cell_id, position_id=None, window_size=(40, 40), region=None, channel=None)

Crops a window around the coordinates of a single cell in array.

Parameters

• image (Image) –

• array (Array) –

• cell_id (int) –

• position_id (Optional[int], default: None) –

• window_size (Tuple[int], default: (40, 40)) –

• region (Optional[str], default: None) –

• channel (Optional[str], default: None) –

Return type

Image

overlay_tracks(image, track, boundaries=False, mode='inner')

Overlays the labels of objects over the reference image.

Parameters

• image (Image) –

• track (Mask) –

• boundaries (bool, default: False) –

• mode (str, default: 'inner') –

Return type

Image

save_kept_cells(track, array)

Creates a mask from the input track that only includes the cells that are present in array.

Parameters

• track (Mask) –

• array (Array) – ConditionArray containing lineage information

Return type

Mask